PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family YABBY
Protein Properties Length: 257aa    MW: 28418.5 Da    PI: 6.698
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100436.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY197.17.4e-61101655168
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      s+eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt llsvn++kas +     h    l  + ++++++ee +l++ ++++ +  +  s  
  XP_010100436.1  10 LSAEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTGLLSVNMTKASFIP---LH----LLASFTQDEQKEEVDLEEVDTQNATDIR--SPV 95 
                     5789*****************************************99887542...22....2334555666666666555554433333..332 PP

           YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168
                       s+ne+ +v  v + v++PPekr+r+Psaynrfi+eei+r+k +nP+++h+eafs+aaknWa fP+  +
  XP_010100436.1  96 VSSDNEEVDVVSVNQiVNKPPEKRKRAPSAYNRFIREEIKRLKDENPNMAHKEAFSTAAKNWANFPPTEY 165
                     33677777777777779*************************************************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-6012165IPR006780YABBY protein
SuperFamilySSF470952.09E-10110164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.1E-7113164IPR009071High mobility group box domain
CDDcd013901.96E-7120177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSALNHLLDL SAEQICYVQC GFCTTILLVS VPCSSLSMVV TVRCGHCTGL LSVNMTKASF  60
IPLHLLASFT QDEQKEEVDL EEVDTQNATD IRSPVVSSDN EEVDVVSVNQ IVNKPPEKRK  120
RAPSAYNRFI REEIKRLKDE NPNMAHKEAF STAAKNWANF PPTEYKEDEE SCSQGKENVT  180
LDSHVNKHHG AEFLALRRYC VKIMGVAALS WAPKRCPFYP TALIPSDFSA KALQTGAKVP  240
PILPHCADSV KLSAKAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100436.10.0hypothetical protein L484_027747
SwissprotQ9LDT38e-65YAB4_ARATH; Axial regulator YABBY 4
TrEMBLW9RKR40.0W9RKR4_9R
STRINGVIT_01s0127g00330.t017e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-58YABBY family protein